@inproceedings{liu-etal-2026-systematic-evaluation,title={Systematic Evaluation of the Quality of Synthetic Clinical Notes Rephrased by {LLM}s at Million-Note Scale},author={Liu, Jinghui and Soni, Sarvesh and Nguyen, Anthony},editor={Demner-Fushman, Dina and Ananiadou, Sophia and Roberts, Kirk and Tsujii, Junichi},booktitle={Proceedings of the 25th Workshop on Biomedical Natural Language Processing},month=jul,year={2026},address={San Diego, California},publisher={Association for Computational Linguistics},url={https://aclanthology.org/2026.bionlp-1.28/},pages={353--371},isbn={979-8-89176-434-7},}
BioNLP
Bridging the Version Gap: Multi-version Training Improves ICD Code Prediction, Especially for Rare Codes
Jinghui Liu and Anthony Nguyen
In Proceedings of the 25th Workshop on Biomedical Natural Language Processing, Jul 2026
@inproceedings{liu-nguyen-2026-bridging,title={Bridging the Version Gap: Multi-version Training Improves {ICD} Code Prediction, Especially for Rare Codes},author={Liu, Jinghui and Nguyen, Anthony},editor={Demner-Fushman, Dina and Ananiadou, Sophia and Roberts, Kirk and Tsujii, Junichi},booktitle={Proceedings of the 25th Workshop on Biomedical Natural Language Processing},month=jul,year={2026},address={San Diego, California},publisher={Association for Computational Linguistics},url={https://aclanthology.org/2026.bionlp-1.29/},pages={372--381},isbn={979-8-89176-434-7},}
2025
IEEE JBHI
Comparing text-based clinical risk prediction in critical care: A note-specific hierarchical network and Large Language Models
Jinghui Liu, Anthony Nguyen, Daniel Capurro, and Karin Verspoor
IEEE Journal of Biomedical and Health Informatics, 2025
@article{liu2025hierarchical,title={Comparing text-based clinical risk prediction in critical care: A note-specific hierarchical network and Large Language Models},author={Liu, Jinghui and Nguyen, Anthony and Capurro, Daniel and Verspoor, Karin},journal={IEEE Journal of Biomedical and Health Informatics},year={2025},volume={PP},number={99},pages={1--12},publisher={IEEE},url={https://ieeexplore.ieee.org/document/11016178},}
AIIM
Generating synthetic clinical text with local large language models to identify misdiagnosed limb fractures in radiology reports
Jinghui Liu, Bevan Koopman, Nathan J. Brown, Kevin Chu, and Anthony Nguyen
@article{liu2025synthetic,title={Generating synthetic clinical text with local large language models to identify misdiagnosed limb fractures in radiology reports},author={Liu, Jinghui and Koopman, Bevan and Brown, Nathan J. and Chu, Kevin and Nguyen, Anthony},journal={Artificial Intelligence in Medicine},year={2025},volume={159},pages={103027},publisher={Elsevier},url={https://www.sciencedirect.com/science/article/pii/S0933365724002690},}
2024
ALTA
Rephrasing Electronic Health Records for Pretraining Clinical Language Models
Jinghui Liu and Anthony Nguyen
In Proceedings of the 22nd Annual Workshop of the Australasian Language Technology Association, 2024
@inproceedings{liu2024rephrasing,title={Rephrasing Electronic Health Records for Pretraining Clinical Language Models},author={Liu, Jinghui and Nguyen, Anthony},booktitle={Proceedings of the 22nd Annual Workshop of the Australasian Language Technology Association},year={2024},pages={164--172},url={https://aclanthology.org/2024.alta-1.13/},}
BioNLP
e-Health CSIRO at “Discharge Me!” 2024: Generating Discharge Summary Sections with Fine-tuned Language Models
Jinghui Liu, Aaron Nicholson, Jason Dowling, Bevan Koopman, and Anthony Nguyen
In Proceedings of the 23rd Workshop on Biomedical Natural Language Processing, 2024
@inproceedings{liu2024dischargeme,title={e-{H}ealth {CSIRO} at ``{D}ischarge {M}e!'' 2024: Generating Discharge Summary Sections with Fine-tuned Language Models},author={Liu, Jinghui and Nicholson, Aaron and Dowling, Jason and Koopman, Bevan and Nguyen, Anthony},booktitle={Proceedings of the 23rd Workshop on Biomedical Natural Language Processing},year={2024},pages={675--684},url={https://aclanthology.org/2024.bionlp-1.59/},}
BioNLP
e-Health CSIRO at RadSum23: Adapting a Chest X-Ray Report Generator to Multimodal Radiology Report Summarisation
Aaron Nicholson, Jinghui Liu, Jason Dowling, Bevan Koopman, and Anthony Nguyen
In Proceedings of the 23rd Workshop on Biomedical Natural Language Processing, 2024
@inproceedings{nicholson2024radsum,title={e-{H}ealth {CSIRO} at {R}ad{S}um23: Adapting a Chest X-Ray Report Generator to Multimodal Radiology Report Summarisation},author={Nicholson, Aaron and Liu, Jinghui and Dowling, Jason and Koopman, Bevan and Nguyen, Anthony},booktitle={Proceedings of the 23rd Workshop on Biomedical Natural Language Processing},year={2024},pages={545--549},url={https://aclanthology.org/2024.bionlp-1.8/},}
MedInfo
Uncovering Variations in Clinical Notes for NLP Modeling
Jinghui Liu, Daniel Capurro, Anthony Nguyen, and Karin Verspoor
Studies in Health Technology and Informatics, 2024
@article{liu2024variations,title={Uncovering Variations in Clinical Notes for {NLP} Modeling},author={Liu, Jinghui and Capurro, Daniel and Nguyen, Anthony and Verspoor, Karin},journal={Studies in Health Technology and Informatics},year={2024},volume={310},pages={1460--1461},url={https://ebooks.iospress.nl/doi/10.3233/SHTI231244},}
2023
ALTA
Enhancing Bacterial Infection Prediction in Critically Ill Patients by Integrating Clinical Text
Jinghui Liu and Anthony Nguyen
In Proceedings of the 21st Annual Workshop of the Australasian Language Technology Association, 2023
@inproceedings{liu2023bacterial,title={Enhancing Bacterial Infection Prediction in Critically Ill Patients by Integrating Clinical Text},author={Liu, Jinghui and Nguyen, Anthony},booktitle={Proceedings of the 21st Annual Workshop of the Australasian Language Technology Association},year={2023},pages={118--124},url={https://aclanthology.org/2023.alta-1.13/},}
ALTA
Catching Misdiagnosed Limb Fractures in the Emergency Department Using Cross-institution Transfer Learning
Filip Rusak, Bevan Koopman, Nathan Brown, Kevin Chu, Jinghui Liu, and Anthony Nguyen
In Proceedings of the 21st Annual Workshop of the Australasian Language Technology Association, 2023
@inproceedings{rusak2023limb,title={Catching Misdiagnosed Limb Fractures in the Emergency Department Using Cross-institution Transfer Learning},author={Rusak, Filip and Koopman, Bevan and Brown, Nathan and Chu, Kevin and Liu, Jinghui and Nguyen, Anthony},booktitle={Proceedings of the 21st Annual Workshop of the Australasian Language Technology Association},year={2023},pages={78--87},url={https://aclanthology.org/2023.alta-1.8/},}
JBI
Attention-based multimodal fusion with contrast for robust clinical prediction in the face of missing modalities
Jinghui Liu, Daniel Capurro, Anthony Nguyen, and Karin Verspoor
@article{liu2023multimodal,title={Attention-based multimodal fusion with contrast for robust clinical prediction in the face of missing modalities},author={Liu, Jinghui and Capurro, Daniel and Nguyen, Anthony and Verspoor, Karin},journal={Journal of Biomedical Informatics},year={2023},volume={145},pages={104466},publisher={Elsevier},url={https://www.sciencedirect.com/science/article/pii/S1532046423001879},}
2022
ALTA
Improving Text-based Early Prediction by Distillation from Privileged Time-Series Text
Jinghui Liu, Daniel Capurro, Anthony Nguyen, and Karin Verspoor
In Proceedings of the 20th Annual Workshop of the Australasian Language Technology Association, 2022
@inproceedings{liu2022distillation,title={Improving Text-based Early Prediction by Distillation from Privileged Time-Series Text},author={Liu, Jinghui and Capurro, Daniel and Nguyen, Anthony and Verspoor, Karin},booktitle={Proceedings of the 20th Annual Workshop of the Australasian Language Technology Association},year={2022},pages={73--83},url={https://aclanthology.org/2022.alta-1.10/},}
JBI
“Note Bloat” impacts deep learning-based NLP models for clinical prediction tasks
Jinghui Liu, Daniel Capurro, Anthony Nguyen, and Karin Verspoor
@article{liu2022notebloat,title={``Note Bloat'' impacts deep learning-based {NLP} models for clinical prediction tasks},author={Liu, Jinghui and Capurro, Daniel and Nguyen, Anthony and Verspoor, Karin},journal={Journal of Biomedical Informatics},year={2022},volume={133},pages={104149},publisher={Elsevier},url={https://www.sciencedirect.com/science/article/pii/S1532046422001617},}
2021
npj Digit. Med.
Early prediction of diagnostic-related groups and estimation of hospital cost by processing clinical notes
Jinghui Liu, Daniel Capurro, Anthony Nguyen, and Karin Verspoor
@article{liu2021drg,title={Early prediction of diagnostic-related groups and estimation of hospital cost by processing clinical notes},author={Liu, Jinghui and Capurro, Daniel and Nguyen, Anthony and Verspoor, Karin},journal={NPJ Digital Medicine},year={2021},volume={4},pages={103},publisher={Nature Publishing Group},url={https://www.nature.com/articles/s41746-021-00474-9},}
2019
JAMIA
Hybrid bag of approaches to characterize selection criteria for cohort identification
V.G. Vinod Vydiswaran, Andrew Strayhorn, Jinghui Liu, others, and Nan Yuan
Journal of the American Medical Informatics Association, 2019
@article{vydiswaran2019cohort,title={Hybrid bag of approaches to characterize selection criteria for cohort identification},author={Vydiswaran, V.G. Vinod and Strayhorn, Andrew and Liu, Jinghui and others and Yuan, Nan},journal={Journal of the American Medical Informatics Association},year={2019},volume={26},number={11},pages={1172--1180},publisher={Oxford University Press},url={https://academic.oup.com/jamia/article/26/11/1172/5518584},}